A Replicated Word Cloud

I found this cool website for generating really awesome looking word clouds: http://www.wordle.net/. Here is a word cloud for this website:

Apparently, the clouds are based on word frequency, but I don’t think it can be pulling much data from this website if Levinson is coming out as one of the most frequently used words. Still, it entertained me for a few minutes. H/T: Glossographia.

The Rap Guide to Human Nature

Last year at Edinburgh’s Fringe Festival me and several of my friends saw this brilliant show called the Rap Guide To Evolution (which I briefly blogged about here). Well this year the same rapper, one Baba Brinkman, was back with a new show: the Rap Guide to Human Nature. Unlike most rap attempts at explaining science, it doesn’t sound like a bad Beastie Boys and Sugarhill Gang pastiche of awkward cadence and simple rhyming. Also, it includes some brilliant interludes from various scientists and researchers, including Olivia Judson and David Sloan Wilson. Here is a video of him performing at Binghampton University (I suppose his audience isn’t straight outta compton):

Some Links #14: Can Robots create their own language?

Can Robots create their own language? Sean already mentioned this in the comments for a previous post. But as I’m a big fan of Luc Steels‘ work this video may as well go on the front page:

Speaking in Tones: Music and Language Partner in the brain. The first of two really good articles in Scientific American. As you can guess by the title, this article is looking at current research into the links between music and language, such as the overlap in brain circuitry, how prosodic qualities of speech are vital in language development, and the way in which a person hears a set of musical notes may be affected by their native language. Sadly, the article is behind a paywall, so unless you have a subscription you’ll only get to read the first few paragraphs, plus the one I’m about to quote:

In a 2007 investigation neuroscientists Patrick Wong and Nina Kraus, along with their colleagues at Northwestern University, exposed English speakers to Mandarin speech sounds and measured the electrical responses in the auditory brain stem using electrodes placed on the scalp. The responses to Mandarin were stronger among participants who had received musical training — and the earlier they had begun training and the longer they had continued training, the stronger the activity in these brain areas.

Carried to extremes: How quirks of perception drive the evolution of species. In the second good article, which by the way is free to view, Ramachandran and Ramachandran propose another mechanism of evolution in regards to perception:

Our hypothesis involves the unintended consequences of aesthetic and perceptual laws that evolved to help creatures quickly identify what in their surroundings is useful (food and potential mates) and what constitutes a threat (environment dangers and predators). We believe that these laws indirectly drive many aspects of the evolution of animals’ shape, size and coloration.

It’s important to note that they are not arguing against natural selection; rather, they are simply offering an addition force that guides the evolution of a species. It’s quite interesting, even if I’m not completely convinced by their hypothesis — but my criticisms can wait until they publish an actual academic paper on the subject.

A robotic model of the human vocal tract? Talking Brains links to the Anthropomorphic Talking Robot developed at Waseda University. Apparently it can produce some vowels. Here is a picture of the device (which looks like some sort of battle drone):

Battle Drone or Model Vocal Tract?

Y Chromosome II: What is its structure? Be sure to check out the new contributor over at GNXP, Kele Cable, and her article on the structure of the Y Chromosome. I found this sentence particularly amusing:

As you can see in Figure 1, the Y chromosome (on the right) is puny and diminutive. It really is kind of pathetic once you look at it.

Scientopia. A cool collection of bloggers have banded together to form Scientopia. With plenty of articles having already appeared it all looks very promising. In truth, it’s probably not going to be as successful as ScienceBlogs, largely because it doesn’t pay contributors and, well, nothing is ever going to be as big as ScienceBlogs was at its peak. This new ecology of the science blogosphere is well articulated in a long post by Bora over at A Blog Around the Clock.

Some Links #13: Universal Grammar Haters

Universal Grammar haters. Mark Lieberman takes umbrage with claims that Ewa Dabrowska’s recent work challenges the concept of a biologically evolved substrate for language. Put simply: it doesn’t. What their experiments suggest is that there are considerable differences in native language attainment. As some of you will probably know, I’m not necessarily a big fan of most UG conceptions, however, there are plenty of papers that directly deal with such issues. Dabrowska’s not being one of them. In Lieberman’s own words:

In support of this view, let me offer another analogy. Suppose we find that deaf people are somewhat more likely than hearing people to remember the individual facial characteristics of a stranger they pass on the street. This would be an interesting result, but would we spin it to the world as a challenge to the widely-held theory that there’s an evolutionary substrate for the development of human face-recognition abilities?

Remote control neurons. I remember reading about optogenetics awhile back. It’s a clever technique that enables neural manipulation through the use of light-activated channels and enzymes. Kevin Mitchell over at GNXP classic refers to a new approach where neurons are activated using a radio frequency magnetic field. The obvious advantage to this new approach being fairly straight-forward: magnetic-fields pass through brains far more easily than light. It means the new approach is a lot less invasive, without the need to insert micro-optical fibres or light-emitting diodes. Cool stuff.

Motor imagery enhances object recognition. Neurophilosophy has an article about a study showing that motor simulations may enhance the recognition of tools:

According to these results, then, the simple action of squeezing the ball not only slowed down the participants’ naming of tools, but also slightly reduced their accuracy in naming them correctly. This occured, the authors say, because squeezing the ball involves the same motor circuits needed for generating the simulation, so it interferes with the brain’s ability to generate the mental image of reaching out and grasping the tool. This in turn slows identification of the tools, because their functionality is an integral component of our conceptualization of them. There is other evidence that  parallel motor simulations can interfere with movements, and with each other: when reaching for a pencil, people have a larger grip aperture if a hammer is also present than if the pencil is by itself.

On the Origin of Science Writers. If you fancy yourself as a science writer, then Ed Yong, of Not Exactly Rocket Science, wants to read your story. As expected, he’s got a fairly large response (97 comments at the time of writing), which includes some of my favourite science journalists and bloggers. It’s already a useful resource, full of fascinating stories and bits of advice, from a diverse source of individuals.

Some thoughts about science blog aggregation. Although it’s still hanging about, many people, including myself, are looking for an alternative to the ScienceBlogs network. Dave Munger points to Friendfeed as one potential solution, with him setting up a feed for all the Anthropology posts coming in from Research Blogging. Also, in the comments Christina Pikas mentioned Nature Blogs, which, I’m ashamed to say, I haven’t come across before.

Time Travel, Dreams and The Origin of Knowledge

I’ve been attending a weekly seminar on the Metaphysics of Time Travel, given by Alasdair Richmond.  Yesterday, he was talking about the way knowledge arises in causal chains.  Popper (1972 and various others) argues that “Knowledge comes into existence only by evolutionary, rational processes” (quoted from Paul Nahin, ‘Time Machines: Time Travel in Physics, Metaphysics and Science Fiction, New York, American Institute of Physics, 1999: 312).  Good news for us scholars of Cultural Evolution.  However, Richmond also talked about the work of David Lewis on the nature of causality.  There are three ways that causal chains can be set up:

The first is an infinite sequence of events each caused by the previous one.  For example, I’m typing this blog because my PhD work is boring, I’m doing a PhD because I was priced in by funding, I applied for funding because everyone else did … all the way back past my parents meeting and humans evolving etc.

The second option is for a finite sequence of events – like the first option, but with an initial event that caused all the others, like the big-bang.

The third option is a circular sequence of events.  In this, A is caused by B which is caused by A.  For instance, I’m writing doing a PhD because I got funding and I got funding because I’m doing a PhD, because I got funding.  There is no initial cause, the states just are. This third option seems really odd, not least because it involves time-travel.  Where do the states come from?  However, argues Lewis, they are no more odd than any of the other two options.  Option one has a state with no cause and option two has a cause for every event but no original cause.  So, how on earth can we get at the origin of knowledge if there is no logical possibility of determining the origin of any sequence of events?

One answer is just to stop caring after a certain point.  Us linguists are unlikely to get to the point where we’re studying vowel shifts in the first few seconds of the big bang.

The other answer is noise.  Richmond suggested that ‘Eureka’ moments triggered by random occurrences, for instance (Nicholas J. J. Smith, ‘Bananas Enough for Time Travel?’, British Journal for the Philosophy of Science, Vol. 48, 1997: 363-89). mishearing someone or a strange dream, could create information without prior cause.

Spookily, the idea I submitted for my PhD application came to me in a dream.

Some Links #12: What if there had never been a cognitive revolution?

What if there had never been a cognitive revolution? Apparently, nothing would really be all that different according to Nicolas Baumard over at ICCI. It’s all speculative, in a similar vein to alternative history fiction (I recommend: Making History by Stephen Fry and Difference Engine by William Gibson and Bruce Sterling), with Baumard stating:

My point here is that these key ideas would have emerged even without a Cognitive Revolution. Take for instance the idea that the mind cannot be a blank slate. This idea is totally natural to evolutionary biologists. What about the mind as “a complex system composed of many interacting parts”? Without going back to La Mettrie, Hutcheson or Descartes, one can argue that the idea of modularity is at the core of the research program of neuropsychology since its beginning (the same is true, albeit at a lesser degree, for evolutionary biology). We should not forget as well that, with or without the Cognitive Revolution, brain imaging techniques would have emerged and would have joined neuropsychology and evolutionary biology in decomposing the mind. Add the methodological advances of developmental psychology or social psychology – which were not part of the Cognitive revolution – and you get a pretty big part of today’s ‘Cognition and Culture’.

‘Mad Men -ese. Ben Zimmer has a cool article on Mad Men (easily one of the best shows to have emerged in recent years) and its dedication to accurately portraying 1960s dialogue. But with such dedication comes equally dedicated, and pedantic, criticisms of some of the lines used. For example, Zimmer points to Don’s line “The window for this apology is closing” as being tied to the 70s use of window in a metaphorical sense. On another note: the new season of Mad Men begins tomorrow (25th June) in America.

A growing isolated brain can organize itself. Deric Bownds points to an article by Zhou et al (2010) which disconnected a mouse’s neocortex from the rest of its brain to see how the surface map developed. The results:

During these weeks, the mutant mice, despite having disconnected brains, display a variety of behaviors: eating, drinking, walking, and swimming. Thus, “protomap” formation, namely cortical lamination and formation of areas, proceed normally in absence of extrinsic connections, but survival of projection neurons and acquisition of mature morphological and some electrophysiological features depend on the establishment of normal cortical–subcortical relationships.

Things I’d like to see: a nice, simple, colourful website on evidence-based social policy. Being an avid reader of Ben Goldacre’s Bad Science column, and having read his book of the same name, I was surprised to find that he has another blog. Anyway, the linked post is fairly self-explanatory: he’s calling for someone to create a website looking at evidence-based social policy (something he’s been discussing since at least 2007). I’m a big fan of this idea, which would see social policy based on less rhetorical wrangling and more on actual evidence:

There are three key stages in evidence-based practise: you generate evidence; you collate and appraise it, and then you disseminate and implement. It feels to me like the last bit is currently underdone, and often it takes one clear information hub, or an organisation devoted to promoting something, to move things on.

Why money makes you unhappy. Money is apparently not very good at making us happy. Jonah Lehrer writes about a study exploring the experience-stretching hypothesis, and how it relates to money and happiness. Basically, the argument is that because money allows us to enjoy the best things in life, we actually end up lessening our ability to enjoy the mundane aspects of our life. As the mundane aspects are most frequent, then this isn’t necessarily a good thing. This comes on the back of another paper claiming that the United States, currently the richest nation on Earth, is slowly getting less satisfied with life.  As the current study states:

Taken together, our findings provide evidence for the provocative notion that having access to the best things in life may actually undermine one’s ability to reap enjoyment from life’s small pleasures. Our research demonstrates that a simple reminder of wealth produces the same deleterious effects as actual wealth on an individual’s ability to savor, suggesting that perceived access to pleasurable experiences may be sufficient to impair everyday savoring. In other words, one need not actually visit the pyramids of Egypt or spend a week at the legendary Banff spas in Canada for one’s savoring ability to be impaired—simply knowing that these peak experiences are readily available may increase one’s tendency to take the small pleasures of daily life for granted.

Noam Chomsky: Inventor of Linguistics… Huh?

I just started reading Johann Hari’s latest article about Noam Chomsky, and I was welcomed to this interesting fact:

Noam Chomsky is one of the most hysterically abused figures in the world today. Even his critics have to concede that his work inventing the field of linguistics — and so beginning to decode the structure of how language is formed in the human brain — makes him one of the most important intellectuals alive.

I agree that Chomsky is an important intellectual figure, and his massive contributions to linguistics are well-documented, but he did not invent the field. Some might say reinvented… Although, I’m not sure how favourably history will view Chomsky’s shadow having loomed over linguistics for such a long time. My own opinion, for what it’s worth, is that he’s largely been a positive influence, even if I find myself disagreeing with a lot of his major ideas.

Some Links #10: Poo lady tweets shit

Gillian McKeith: You are what you tweet. If you thought the subject of my title was some five-year who just discovered various nouns for his excrement, then you’re not far off: Gillian McKeith is back, and like any bad-sequel she’s saying the same shit, just repackaged into an eerily similar set of events. What I particularly loved about this article is McKeith’s denial that she’s actually the McKeith in question. Confused? Head over and read the article. It’s short and fun.

A strong dose of regulation will keep the health food industry regular. Interesting article by Martin Robbins (of Lay Scientist) over at the Guardian. I’m not normally one for regulation: I think it’s often a backwards way of looking at an issue. And I’m definitely against our ridiculous zeal for legislation-only solutions. But I do think in the case of the health food industry regulation and legislation are fantastically effective. To bring it back to the post above: McKeith has literally made millions through the exploitation of a weakly controlled industry. Ultimately, though, I do think we need to also consider the other effective weapon against these erroneous claims: education. After all, those who know, know not to buy.

I Write Like… H.P. Lovecraft, apparently. It probably explains the lack of comments on my posts: people are scared shitless. It’s okay, I’m not a venomous wordsmith, just a former linguistics student searching for a new university to call home. See, not so scary now… Click the link if you fancy wasting a minute or so of your time.

The Price of Altruism. I always remember first learning about the Price equation at university, and the sad story of its progenitor, George Price, who committed suicide in 1975. Over a Gene Expression, Razib Khan has written a fantastic, in-depth review of Oren Harman’s book, The Price of Altruism. There are too many snippets of information to pick out for a summary, but here’s an ironically amusing section:

The “hawk” and “dove” morphs made famous by Richard Dawkins in The Selfish Gene go back to Maynard Smith’s work, but the terms themselves were of Price’s invention according to Harman. If I read Harman’s chronology correctly Price was already a fervent Christian by this time, having left atheism in the same period as he launched his career as an evolutionary biologist, and there is some hint that the term “dove” may have been influenced by his particular religious leanings. This possibility seems all the more amusing in light of Dawkins’ later career as an atheist polemicist.

Matt Ridley: When Ideas Have Sex. Love him for his biology, or loathe him for his economics, you can’t help but nod in agreement with Matt Ridley’s TED talk. I think he over emphasizes this apparent trend of good times to come. He clearly hasn’t read Taleb’s Black Swan (and probably isn’t all too interested given his risk-taking strategies at Northern Rock). But his stuff on trade and cultural evolution is fairly rock solid from my perspective.

Some Links #9: Sowing the Seed of doubt

This isn’t the first time Seed has sacrificed editorial independence. A worrying article about scienceblogs’ parent company, Seed, and how they restricted the publication of a column on the basis of it being critical of Dow Chemical — someone they were seeking an advertising contract with. As Gaia Vince points out in an email she received from Seed:

We’re not running the bhopal piece, and we’re passing on the Maldive shark ban (a bit late now… Too bad it got caught up in prod week… ). As for Bhopal, it’s a cautionary call on our part as we’re in the midst of advertising negotiations with Dow (who have been inspired by Seed’s photography in their own brand campaigns). RE: the payment, as you’re on a scheduled direct-payment, the bhopal fee covers the Kerry/Carbon trading news piece fee that was outstanding. Let me know if that’s clear.

It’s a great article that’s not only revealing about Seed, but the underlying motivations of the journalism industry in general. I never thought I’d find myself linking to Chomsky’s politics, yet, given the nature of this article, maybe it’s time I dug out my copy of Manufacturing Consent.

Scientific Certainty Argumentation Methods (SCAMs): Science and the politics of doubt. H/T: Ben Goldacre. A good paper looking at what happens when science and politics mix, and how the two have different expectations of what science is. Here’s the abstract:

At least since the time of Popper, scientists have understood that science provides falsification, but not “proof.” In the world of environmental and technological controversies, however, many observers continue to call precisely for “proof,” often under the guise of “scientific certainty.” Closer examination of real-world disputes suggests that such calls may reflect not just a fundamental misunderstanding of the nature of science, but a clever and surprisingly effective political-economic tactic—”Scientific Certainty” Argumentation Methods, or SCAMs. Given that most scientific findings are inherently probabilistic and ambiguous, if agencies can be prevented from imposing any regulations until they are unambiguously “justified,” most regulations can be defeated or postponed, often for decades, allowing profitable but potentially risky activities to continue unabated. An exploratory examination of previously documented controversies suggests that SCAMs are more widespread than has been recognized in the past, and that they deserve greater attention in the future.

The secret history of X and Z. An excellent article from Ed Yong on Chromosome evolution in humans and birds. Key paragraph:

Why the similarities? It’s possible that both X and Z evolved from autosomes with features that made them more likely to become sex chromosomes. Perhaps, for example, their genes were already sparsely distributed. But Bellott ruled out this idea. He compared X to its closest counterpart in chicken, and Z to its equivalents in humans – none of these relatives had any structural features that made them stand out among other autosomes. There’s nothing that singles them out as ideal candidates for the role of sex chromosome.

You are not authorized to see these pictures of the oil spill, citizen… Do not look. Washington’s Blog has some fairly harrowing photos of the recent gulf oil spill and the damage it’s doing to wildlife. Here’s one example:

Some links #8: Are you WEIRD?

We agree it’s WEIRD, but is it WEIRD enough? Greg Downey at Neuroanthropology gives his take on Henrich et al.’s paper The weirdest people in the world? which looks at acronym WEIRD (Western, Educated, Industrialized, Rich, and Democratic) and how we may be extrapolating too much from this particularly narrow data set. Yet, despite this, we continue to use WEIRD individuals in psychological experiments, even though it may not be representative of, say, the large body of Africans. I mean, come on, you wouldn’t take genetic data from Western Europe and then make sweeping generalisations about populations in Western Africa…

The Human Penis Bone. From WEIRD to just weird. Scicurious reviews a very old journal article from 1913, which tells of a guy who actually grew a penis bone. Now, many mammals do have penis bones, but human males generally lack this ossified aid. However, if you’re curious about how to get one, then all you have to do is simply wear a particular type of corset (see below) and, here’s a downside for those of you planning on ditching the Viagra, get syphilis. As Scicurious explains:

The syphilis, combined with the constant irritation of the corset, had apparently caused a build up of desposits, which eventually ossified and turned in to bone. REAL BONE, with marrow and holes in it and everything! […] So the moral of this story is: if you’re a guy, and you’re vain about your appearance, get a flat front corset. You don’t want to be sitting down in something pointy.

Wild cat found mimicking monkey calls. Some clever vocal mimicry from a margay. ScienceDaily reports:

Researchers first recorded the incident in 2005 when a group of eight pied tamarins were feeding in a ficus tree. They then observed a margay emitting calls similar to those made by tamarin babies. This attracted the attention of a tamarin “sentinel,” which climbed down from the tree to investigate the sounds coming from a tangle of vines called lianas. While the sentinel monkey started vocalizing to warn the rest of the group of the strange calls, the monkeys were clearly confounded by these familiar vocalizations, choosing to investigate rather than flee. Four other tamarins climbed down to assess the nature of the calls. At that moment, a margay emerged from the foliage walking down the trunk of a tree in a squirrel-like fashion, jumping down and then moving towards the monkeys. Realizing the ruse, the sentinel screamed an alarm and sent the other tamarins fleeing.

Nongenetic selection and evolution: flies use bacteria to adapt to parasitic worms. Jerry Coyne has a fascinating post about nongenetic evolution occurring in a mushroom-eating fruit fly Drosophila neotestacea. But how is it nongenetic? Well, as Jerry explains:

A new paper by John Jaenike and his colleagues in Science, however, shows a form of biological evolution by natural selection that isn’t based on changes in genes. It’s based on changes in the presence of symbiotic bacteria that protect a species from parasites […] Some flies also carry another organism: the bacterial symbiont Spiroplasma, which is found in many insects.  In D. neotestacea, however, the presence of Spiroplasma protects the fly from the sterilizing effects of nematodes.  While flies with worms and no Spiroplasma are virtually sterile, the presence of the bacteria confers almost normal fertility on worm-ridden flies.  It’s not yet clear how this works, but worms in flies with Spiroplasma are much smaller than those without the bacteria. Presumably the bacteria does something to the worms (or to the flies) that makes the worms grow much more slowly.